3 Characterizing and preparing network data

• 3.1 Properties of Networks

• 3.2 Node Properties and Relationships

• 3.3 Network summary statistics

• 3.4 Degree Matrices and Laplacians

• 3.5 Subnetworks and Connected Components

• 3.6 Regularization and node pruning

• 3.7 Edge Regularization

• 3.8 Edge-weight global rescaling

• Code Reproducibility contains all of the code as-provided in the manuscript for the entire section.